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Articles
The European Nucleotide Archive in 2021
Carla Cummins, Alisha Ahamed, Raheela Aslam, Josephine Burgin, Rajkumar Devraj, Ossama Edbali, … Sam Holt. (2021). The European Nucleotide Archive in 2021. Nucleic Acids Research, 50(D1), D106–D110. https://doi.org/10.1093/nar/gkab1051
Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users
Dall'Olmo G, Nencioli F, Jackson T et al. Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users[version 2; peer review: 2 approved]. Open Research Europe NaN, 1:117 (https://doi.org/10.12688/openreseurope.14133.2)
Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Position
Anett Endrédi et al., “Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Positions,” Frontiers in Marine Science, vol. 8, 2021. 10.3389/fmars.2021.636042
Integrating environmental variability to broaden the research on coral responses to future ocean conditions
Maren Ziegler et al., “Integrating environmental variability to broaden the research on coral responses to future ocean conditions,” Global Change Biology, 2021. 10.1111/gcb.15840
Environmental vulnerability of the global ocean epipelagic plankton community Interactome
Chaffron, Samuel, et al. "Environmental vulnerability of the global ocean epipelagic plankton community interactome." Science advances 7.35 (2021): eabg1921.
Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean
Paul Strubinger Sandoval, Giorgio Dall’Olmo, Keith Haines, Rafael Rasse, & Jelizaveta Ross. (2021). Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean. Open Research Europe, 1. https://doi.org/10.12688/openreseurope.13395.1
Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period
N. Le Grix, et al. (2021). Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period. Biogeosciences, 18(6), 2119–2137. https://doi.org/10.5194/bg-18-2119-2021
Major restructuring of marine plankton assemblages under global warming
Benedetti, F., Vogt, M., Elizondo, U.H. et al. Major restructuring of marine plankton assemblages under global warming. Nat Commun 12, 5226 (2021). https://doi.org/10.1038/s41467-021-25385-x
Macroscale patterns of oceanic zooplankton composition and size structure
Brandão, M.C., Benedetti, F., Martini, S. et al. Macroscale patterns of oceanic zooplankton composition and size structure. Sci Rep 11, 15714 (2021). https://doi.org/10.1038/s41598-021-94615-5
The European Nucleotide Archive in 2020
Peter W. Harrison, et al. (2020). The European Nucleotide Archive in 2020. Nucleic Acids Research, 49, D82–D85. https://doi.org/10.1093/nar/gkaa1028
Reports and recommendations
Nourishing Blue Economy and Sharing Ocean Knowledge - Ocean information for sustainable development
Tanhua, Toste, Kazanidis, Georgios, Sá, Sandra, Neves, Caique, Obaton, Dominique, & Sylaios, Georgios. (2021). Nourishing Blue Economy and Sharing Ocean Knowledge - Ocean information for sustainable development. Zenodo. https://doi.org/10.5281/zenodo.5576120
Standards, best practices, challenges and incentives for maximising the use of ocean data in the Atlantic region
Sara Pittonet Gaiarin. (2021). Standards, best practices, challenges and incentives for maximising the use of ocean data in the Atlantic region (1.0). Zenodo. https://doi.org/10.5281/zenodo.5483679
Research data
ZooBase: A global synthesis of marine zooplankton species occurrences
Benedetti, F., Vogt, M., Hofmann-Elizondo, U., Righetti, D., Zimmermann, N. E., & Gruber, N. (2021). ZooBase: A global synthesis of marine zooplankton species occurrences. [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5101349
Ensemble projections (+ uncertainties) of contemporary (2012-2031) and future (2081-2100) mean annual plankton/phytoplankton/zooplankton species diversity (and species turn-over in time) for the global surface open ocean.
Benedetti, F., Vogt, M., Hofmann-Elizondo, U., Righetti, D., Zimmermann, N. E., & Gruber, N. (2021). Ensemble projections (+ uncertainties) of contemporary (2012-2031) and future (2081-2100) mean annual plankton/phytoplankton/zooplankton species diversity (and species turn-over in time) for the global surface open ocean. [Data set]. Zenodo. https://doi.org/10.5281/zenodo.51015189
Software
Code to generate OLTraj product
Francesco Nencioli, & Giorgio Dall'Olmo. (2021). Code to generate OLTraj product (v2.2). Zenodo. https://doi.org/10.5281/zenodo.5082983
Set of examples to demonstrate how to use OLTraj to implement Lagrangian analyses.
Giorgio Dall'Olmo, Francesco Nencioli, Thomas Jackson, Robert J. W. Brewin, John A. Gittings, & Dionysios E. Raitsos. (2021). grgdll/OLTraj_examples: OLTraj_Examples_v1.0 (v1.0). Zenodo. https://doi.org/10.5281/zenodo.5518531
Public deliverables
AtlantECO - D4.5: Report on augmented observations
Rubens Lopes, & Stéphane Pesant. (2022). Deliverable D4.5- Report on augmented observations (1.0). Zenodo. https://doi.org/10.5281/zenodo.7413896
AtlantECO - D4.2: Handbook of Standards and Best Practices (version 2)
Pesant, Stéphane, Muxagatan, Erik, Johns, David, Poulain, Julie, Elineau, Amanda, Huete, Maria, & Schramm, Juliette. (2022). AtlantECO Deliverable - D4.2 - Handbook of Standards and Best Practices (Version V2). Zenodo. https://doi.org/10.5281/zenodo.6956974
AtlantECO - D5.1: Reference catalogue of network reconstruction methods
Budinich Marko, Eveillard Damien, & Chaffron Samuel. (2022). AtlantECO deliverable 5.1- Reference catalogue of network reconstruction methods (1.0). Zenodo. https://doi.org/10.5281/zenodo.6405186
AtlantECO - D1.2: AtlantECO environmental responsibility
Trabut Eloise. (2022). AtlantECO deliverable D1.2- AtlantECO environmental responsibility (V1.0). Zenodo. https://doi.org/10.5281/zenodo.6405190
AtlantECO - D6.1: Dataset of ocean reanalysis and hindcast simulation version 1
Iovino Dorotea, Fogli Pier Giuseppe, & Masina Simona. (2022). AtlantECO deliverable D6.1- Dataset of ocean reanalysis and hindmost simulation version 1 (v1.0). Zenodo. https://doi.org/10.5281/zenodo.6405281
AtlantECO - D4.1: Handbook of Standards and Best Practices
Pesant, S. (2021). AtlantECO - D4.1: Handbook of Standards and Best Practices. Zenodo. https://doi.org/10.5281/zenodo.4897861
AtlantECO D9.2 - AtlantECO communication kit
Lextray Camille, & Trabut Eloise. (2022). Atlanteco deliverable D9.2- Communication kit (V1.0). Zenodo. https://doi.org/10.5281/zenodo.6405328
AtlantECO D9.1 - Communication Plan
Eloïse Trabut, & Abreu, A. (2020). Deliverable D9.1 - Communication Plan. Zenodo. https://doi.org/10.5281/zenodo.5503562
AtlantECO D10.1 - Data Management Plan
Pedro Campilho, Stephane Pesant, Kate Larkin, & Ward Appeltans. (2021). Deliverable 10.1 - Data Management Plan (1.00). Zenodo. https://doi.org/10.5281/zenodo.5503581
AtlantECO D1.1 - Project Management Handbook
Trabut Eloise. (2020). AtlantECO deliverable D1.1- Project Management Handbook (V1.0). Zenodo. https://doi.org/10.5281/zenodo.64053101