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Articles

The European Nucleotide Archive in 2021

Carla Cummins, Alisha Ahamed, Raheela Aslam, Josephine Burgin, Rajkumar Devraj, Ossama Edbali, … Sam Holt. (2021). The European Nucleotide Archive in 2021. Nucleic Acids Research, 50(D1), D106–D110. https://doi.org/10.1093/nar/gkab1051 

Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users

Dall'Olmo G, Nencioli F, Jackson T et al. Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users[version 2; peer review: 2 approved]. Open Research Europe NaN, 1:117 (https://doi.org/10.12688/openreseurope.14133.2)

Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Position

Anett Endrédi et al., “Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Positions,” Frontiers in Marine Science, vol. 8, 2021.  10.3389/fmars.2021.636042 

Integrating environmental variability to broaden the research on coral responses to future ocean conditions

Maren Ziegler et al., “Integrating environmental variability to broaden the research on coral responses to future ocean conditions,” Global Change Biology, 2021.  10.1111/gcb.15840 

Environmental vulnerability of the global ocean epipelagic plankton community Interactome

Chaffron, Samuel, et al. "Environmental vulnerability of the global ocean epipelagic plankton community interactome." Science advances 7.35 (2021): eabg1921.

Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean

Paul Strubinger Sandoval, Giorgio Dall’Olmo, Keith Haines, Rafael Rasse, & Jelizaveta Ross. (2021). Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean. Open Research Europe, 1. https://doi.org/10.12688/openreseurope.13395.1 

Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period

N. Le Grix, et al. (2021). Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period. Biogeosciences, 18(6), 2119–2137. https://doi.org/10.5194/bg-18-2119-2021

Major restructuring of marine plankton assemblages under global warming

Benedetti, F., Vogt, M., Elizondo, U.H. et al. Major restructuring of marine plankton assemblages under global warming. Nat Commun 12, 5226 (2021). https://doi.org/10.1038/s41467-021-25385-x

Macroscale patterns of oceanic zooplankton composition and size structure

Brandão, M.C., Benedetti, F., Martini, S. et al. Macroscale patterns of oceanic zooplankton composition and size structure. Sci Rep 11, 15714 (2021). https://doi.org/10.1038/s41598-021-94615-5

The European Nucleotide Archive in 2020

Peter W. Harrison, et al. (2020). The European Nucleotide Archive in 2020. Nucleic Acids Research, 49, D82–D85. https://doi.org/10.1093/nar/gkaa1028

Articles

Reports and recommendations

Nourishing Blue Economy and Sharing Ocean Knowledge - Ocean information for sustainable development

Tanhua, Toste, Kazanidis, Georgios, Sá, Sandra, Neves, Caique, Obaton, Dominique, & Sylaios, Georgios. (2021). Nourishing Blue Economy and Sharing Ocean Knowledge - Ocean information for sustainable development. Zenodo. https://doi.org/10.5281/zenodo.5576120

Standards, best practices, challenges and incentives for maximising the use of ocean data in the Atlantic region

Sara Pittonet Gaiarin. (2021). Standards, best practices, challenges and incentives for maximising the use of ocean data in the Atlantic region (1.0). Zenodo. https://doi.org/10.5281/zenodo.5483679

Reports

Research data

ZooBase: A global synthesis of marine zooplankton species occurrences

Benedetti, F., Vogt, M., Hofmann-Elizondo, U., Righetti, D., Zimmermann, N. E., & Gruber, N. (2021). ZooBase: A global synthesis of marine zooplankton species occurrences. [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5101349

Ensemble projections (+ uncertainties) of contemporary (2012-2031) and future (2081-2100) mean annual plankton/phytoplankton/zooplankton species diversity (and species turn-over in time) for the global surface open ocean.

Benedetti, F., Vogt, M., Hofmann-Elizondo, U., Righetti, D., Zimmermann, N. E., & Gruber, N. (2021). Ensemble projections (+ uncertainties) of contemporary (2012-2031) and future (2081-2100) mean annual plankton/phytoplankton/zooplankton species diversity (and species turn-over in time) for the global surface open ocean. [Data set]. Zenodo. https://doi.org/10.5281/zenodo.51015189

Data

Software

Code to generate OLTraj product

Francesco Nencioli, & Giorgio Dall'Olmo. (2021). Code to generate OLTraj product (v2.2). Zenodo. https://doi.org/10.5281/zenodo.5082983

Set of examples to demonstrate how to use OLTraj to implement Lagrangian analyses.

Giorgio Dall'Olmo, Francesco Nencioli, Thomas Jackson, Robert J. W. Brewin, John A. Gittings, & Dionysios E. Raitsos. (2021). grgdll/OLTraj_examples: OLTraj_Examples_v1.0 (v1.0). Zenodo. https://doi.org/10.5281/zenodo.5518531

Software

Public deliverables

AtlantECO - D4.5: Report on augmented observations

Rubens Lopes, & Stéphane Pesant. (2022). Deliverable D4.5- Report on augmented observations (1.0). Zenodo. https://doi.org/10.5281/zenodo.7413896

AtlantECO - D4.2: Handbook of Standards and Best Practices (version 2)

Pesant, Stéphane, Muxagatan, Erik, Johns, David, Poulain, Julie, Elineau, Amanda, Huete, Maria, & Schramm, Juliette. (2022). AtlantECO Deliverable - D4.2 - Handbook of Standards and Best Practices (Version V2). Zenodo. https://doi.org/10.5281/zenodo.6956974

AtlantECO - D5.1: Reference catalogue of network reconstruction methods

Budinich Marko, Eveillard Damien, & Chaffron Samuel. (2022). AtlantECO deliverable 5.1- Reference catalogue of network reconstruction methods (1.0). Zenodo. https://doi.org/10.5281/zenodo.6405186

AtlantECO - D1.2: AtlantECO environmental responsibility

Trabut Eloise. (2022). AtlantECO deliverable D1.2- AtlantECO environmental responsibility (V1.0). Zenodo. https://doi.org/10.5281/zenodo.6405190

AtlantECO - D6.1: Dataset of ocean reanalysis and hindcast simulation version 1

Iovino Dorotea, Fogli Pier Giuseppe, & Masina Simona. (2022). AtlantECO deliverable D6.1- Dataset of ocean reanalysis and hindmost simulation version 1 (v1.0). Zenodo. https://doi.org/10.5281/zenodo.6405281

AtlantECO - D4.1: Handbook of Standards and Best Practices

Pesant, S. (2021). AtlantECO - D4.1: Handbook of Standards and Best Practices. Zenodo. https://doi.org/10.5281/zenodo.4897861

AtlantECO  D9.2 - AtlantECO communication kit

Lextray Camille, & Trabut Eloise. (2022). Atlanteco deliverable D9.2- Communication kit (V1.0). Zenodo. https://doi.org/10.5281/zenodo.6405328

AtlantECO  D9.1 - Communication Plan

Eloïse Trabut, & Abreu, A. (2020). Deliverable D9.1 - Communication Plan. Zenodo. https://doi.org/10.5281/zenodo.5503562

AtlantECO  D10.1 - Data Management Plan

Pedro Campilho, Stephane Pesant, Kate Larkin, & Ward Appeltans. (2021). Deliverable 10.1 - Data Management Plan (1.00). Zenodo. https://doi.org/10.5281/zenodo.5503581

AtlantECO  D1.1 - Project Management Handbook

Trabut Eloise. (2020). AtlantECO deliverable D1.1- Project Management Handbook (V1.0). Zenodo. https://doi.org/10.5281/zenodo.64053101

Deliverables
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